gosling.SvTypeTransform#

class gosling.SvTypeTransform(firstBp=Undefined, newField=Undefined, secondBp=Undefined, type=Undefined, **kwds)#

SvTypeTransform schema wrapper

Mapping(required=[type, firstBp, secondBp, newField])

Attributes:
firstBpMapping(required=[chrField, posField, strandField])

Based on the BEDPE, infer SV types. SV types are specified as one of the following strings: DUP, TRA, DEL, t2tINV, h2hINV.

newFieldstring
secondBpMapping(required=[chrField, posField, strandField])

Based on the BEDPE, infer SV types. SV types are specified as one of the following strings: DUP, TRA, DEL, t2tINV, h2hINV.

typestring
__init__(firstBp=Undefined, newField=Undefined, secondBp=Undefined, type=Undefined, **kwds)#

Methods

__init__([firstBp, newField, secondBp, type])

copy([deep, ignore])

Return a copy of the object

from_dict(dct[, validate, _wrapper_classes])

Construct class from a dictionary representation

from_json(json_string[, validate])

Instantiate the object from a valid JSON string

resolve_references([schema])

Resolve references in the context of this object's schema or root schema.

to_dict([validate, ignore, context])

Return a dictionary representation of the object

to_json([validate, ignore, context, indent, ...])

Emit the JSON representation for this object as a string.

validate(instance[, schema])

Validate the instance against the class schema in the context of the rootschema.

validate_property(name, value[, schema])

Validate a property against property schema in the context of the rootschema