API Reference#

This is the class and function reference of gos, and the following content is generated automatically from the code documentation strings. This low-level documentation may not be enough to give full guidelines on their use.

Top-Level Objects#

View

Create a basic Gosling View.

Track

Create a basic Gosling Track.

Encoding Channels#

Color

Color schema wrapper

ColorValue

ColorValue schema wrapper

Opacity

Opacity schema wrapper

OpacityValue

OpacityValue schema wrapper

Row

Row schema wrapper

RowValue

RowValue schema wrapper

Size

Size schema wrapper

SizeValue

SizeValue schema wrapper

Stroke

Stroke schema wrapper

StrokeValue

StrokeValue schema wrapper

StrokeWidth

StrokeWidth schema wrapper

StrokeWidthValue

StrokeWidthValue schema wrapper

Text

Text schema wrapper

TextValue

TextValue schema wrapper

Tooltip

Tooltip schema wrapper

X

X schema wrapper

X1

X1 schema wrapper

X1Value

X1Value schema wrapper

X1e

X1e schema wrapper

X1eValue

X1eValue schema wrapper

XValue

XValue schema wrapper

Xe

Xe schema wrapper

XeValue

XeValue schema wrapper

Y

Y schema wrapper

Y1

Y1 schema wrapper

Y1Value

Y1Value schema wrapper

Y1e

Y1e schema wrapper

Y1eValue

Y1eValue schema wrapper

YValue

YValue schema wrapper

Ye

Ye schema wrapper

YeValue

YeValue schema wrapper

API Functions#

horizontal

Arrange multiple views horizontally.

overlay

Compose an overlaid view from multiple tracks or overliad tracks

parallel

Arrange multiple views in parallel.

serial

Arrange multiple views in serial.

stack

Compose a stacked view from multiple tracks or overlaid tracks.

value

Specify a value for use in an encoding

vertical

Arrange multiple views vertically.

Low-Level Schema Wrappers#

Aggregate

Aggregate schema wrapper

Assembly

Assembly schema wrapper

AxisPosition

AxisPosition schema wrapper

BamData

BamData schema wrapper

BedData

BedData schema wrapper

BeddbData

BeddbData schema wrapper

BigWigData

BigWigData schema wrapper

BinAggregate

BinAggregate schema wrapper

Channel

Channel schema wrapper

ChannelDeep

ChannelDeep schema wrapper

ChannelValue

ChannelValue schema wrapper

ChromSizes

ChromSizes schema wrapper

Color

Color schema wrapper

CoverageTransform

CoverageTransform schema wrapper

CsvData

CsvData schema wrapper

DataDeep

DataDeep schema wrapper

DataTrack

DataTrack schema wrapper

DataTransform

DataTransform schema wrapper

Datum

Datum schema wrapper

DisplaceTransform

DisplaceTransform schema wrapper

Displacement

Displacement schema wrapper

DisplacementType

DisplacementType schema wrapper

DomainChr

DomainChr schema wrapper

DomainChrInterval

DomainChrInterval schema wrapper

DomainInterval

DomainInterval schema wrapper

EventStyle

EventStyle schema wrapper

ExonSplitTransform

ExonSplitTransform schema wrapper

FieldType

FieldType schema wrapper

FilterTransform

FilterTransform schema wrapper

GenomicDomain

GenomicDomain schema wrapper

GenomicLengthTransform

GenomicLengthTransform schema wrapper

GoslingSchema

GoslingSpec

GoslingSpec schema wrapper

IncludeFilter

IncludeFilter schema wrapper

JsonData

JsonData schema wrapper

JsonParseTransform

JsonParseTransform schema wrapper

Layout

Layout schema wrapper

LogBase

LogBase schema wrapper

LogTransform

LogTransform schema wrapper

LogicalOperation

LogicalOperation schema wrapper

Mark

Mark schema wrapper

MatrixData

MatrixData schema wrapper

MouseEventsDeep

MouseEventsDeep schema wrapper

MultipleViews

MultipleViews schema wrapper

MultivecData

MultivecData schema wrapper

OneOfFilter

OneOfFilter schema wrapper

Opacity

Opacity schema wrapper

Orientation

Orientation schema wrapper

OverlaidTrack

OverlaidTrack schema wrapper

OverlaidTracks

OverlaidTracks schema wrapper

PartialTrack

PartialTrack schema wrapper

PredefinedColors

PredefinedColors schema wrapper

Range

Range schema wrapper

RangeFilter

RangeFilter schema wrapper

ResponsiveSize

ResponsiveSize schema wrapper

Root

Root schema wrapper

Row

Row schema wrapper

SchemaBase

Base class for schema wrappers.

SelectivityCondition

SelectivityCondition schema wrapper

SingleTrack

SingleTrack schema wrapper

SingleView

SingleView schema wrapper

Size

Size schema wrapper

SizeVisibilityCondition

SizeVisibilityCondition schema wrapper

StrConcatTransform

StrConcatTransform schema wrapper

StrReplaceTransform

StrReplaceTransform schema wrapper

Stroke

Stroke schema wrapper

StrokeWidth

StrokeWidth schema wrapper

Style

Style schema wrapper

SvTypeTransform

SvTypeTransform schema wrapper

TemplateTrack

TemplateTrack schema wrapper

Text

Text schema wrapper

Tooltip

Tooltip schema wrapper

Track

Create a basic Gosling Track.

ValueExtent

ValueExtent schema wrapper

VcfData

VcfData schema wrapper

VectorData

VectorData schema wrapper

VisibilityCondition

VisibilityCondition schema wrapper

X

X schema wrapper

Y

Y schema wrapper

ZoomLevelVisibilityCondition

ZoomLevelVisibilityCondition schema wrapper

ZoomLimits

ZoomLimits schema wrapper