API Reference

This is the class and function reference of gos, and the following content is generated automatically from the code documentation strings. This low-level documentation may not be enough to give full guidelines on their use.

Top-Level Objects

View	Create a basic Gosling View.
Track	Create a basic Gosling Track.

Encoding Channels

Color	Color schema wrapper
ColorValue	ColorValue schema wrapper
Opacity	Opacity schema wrapper
OpacityValue	OpacityValue schema wrapper
Row	Row schema wrapper
RowValue	RowValue schema wrapper
Size	Size schema wrapper
SizeValue	SizeValue schema wrapper
Stroke	Stroke schema wrapper
StrokeValue	StrokeValue schema wrapper
StrokeWidth	StrokeWidth schema wrapper
StrokeWidthValue	StrokeWidthValue schema wrapper
Text	Text schema wrapper
TextValue	TextValue schema wrapper
Tooltip	Tooltip schema wrapper
X	X schema wrapper
X1	X1 schema wrapper
X1Value	X1Value schema wrapper
X1e	X1e schema wrapper
X1eValue	X1eValue schema wrapper
XValue	XValue schema wrapper
Xe	Xe schema wrapper
XeValue	XeValue schema wrapper
Y	Y schema wrapper
Y1	Y1 schema wrapper
Y1Value	Y1Value schema wrapper
Y1e	Y1e schema wrapper
Y1eValue	Y1eValue schema wrapper
YValue	YValue schema wrapper
Ye	Ye schema wrapper
YeValue	YeValue schema wrapper

API Functions

horizontal	Arrange multiple views horizontally.
overlay	Compose an overlaid view from multiple tracks or overliad tracks
parallel	Arrange multiple views in parallel.
serial	Arrange multiple views in serial.
stack	Compose a stacked view from multiple tracks or overlaid tracks.
value	Specify a value for use in an encoding
vertical	Arrange multiple views vertically.

Low-Level Schema Wrappers

Aggregate	Aggregate schema wrapper
Assembly	Assembly schema wrapper
AxisPosition	AxisPosition schema wrapper
BamData	BamData schema wrapper
BedData	BedData schema wrapper
BeddbData	BeddbData schema wrapper
BigWigData	BigWigData schema wrapper
BinAggregate	BinAggregate schema wrapper
Channel	Channel schema wrapper
ChannelDeep	ChannelDeep schema wrapper
ChannelValue	ChannelValue schema wrapper
ChromSizes	ChromSizes schema wrapper
Color	Color schema wrapper
CoverageTransform	CoverageTransform schema wrapper
CsvData	CsvData schema wrapper
DataDeep	DataDeep schema wrapper
DataTrack	DataTrack schema wrapper
DataTransform	DataTransform schema wrapper
Datum	Datum schema wrapper
DisplaceTransform	DisplaceTransform schema wrapper
Displacement	Displacement schema wrapper
DisplacementType	DisplacementType schema wrapper
DomainChr	DomainChr schema wrapper
DomainChrInterval	DomainChrInterval schema wrapper
DomainInterval	DomainInterval schema wrapper
DummyTrack	DummyTrack schema wrapper
DummyTrackStyle	DummyTrackStyle schema wrapper
EventStyle	EventStyle schema wrapper
ExonSplitTransform	ExonSplitTransform schema wrapper
FieldType	FieldType schema wrapper
FilterTransform	FilterTransform schema wrapper
GenomicDomain	GenomicDomain schema wrapper
GenomicLengthTransform	GenomicLengthTransform schema wrapper
GffData	GffData schema wrapper
GoslingSchema
GoslingSpec	GoslingSpec schema wrapper
IncludeFilter	IncludeFilter schema wrapper
JsonData	JsonData schema wrapper
JsonParseTransform	JsonParseTransform schema wrapper
Layout	Layout schema wrapper
LogBase	LogBase schema wrapper
LogTransform	LogTransform schema wrapper
LogicalOperation	LogicalOperation schema wrapper
Mark	Mark schema wrapper
MatrixData	MatrixData schema wrapper
MouseEventsDeep	MouseEventsDeep schema wrapper
MultipleViews	MultipleViews schema wrapper
MultivecData	MultivecData schema wrapper
OneOfFilter	OneOfFilter schema wrapper
Opacity	Opacity schema wrapper
Orientation	Orientation schema wrapper
OverlaidTrack	OverlaidTrack schema wrapper
OverlaidTracks	OverlaidTracks schema wrapper
PartialTrack	PartialTrack schema wrapper
PredefinedColors	PredefinedColors schema wrapper
Range	Range schema wrapper
RangeFilter	RangeFilter schema wrapper
ResponsiveSize	ResponsiveSize schema wrapper
Root	Root schema wrapper
Row	Row schema wrapper
SchemaBase	Base class for schema wrappers.
SelectivityCondition	SelectivityCondition schema wrapper
SingleTrack	SingleTrack schema wrapper
SingleView	SingleView schema wrapper
Size	Size schema wrapper
SizeVisibilityCondition	SizeVisibilityCondition schema wrapper
StrConcatTransform	StrConcatTransform schema wrapper
StrReplaceTransform	StrReplaceTransform schema wrapper
Stroke	Stroke schema wrapper
StrokeWidth	StrokeWidth schema wrapper
Style	Style schema wrapper
SvTypeTransform	SvTypeTransform schema wrapper
TemplateTrack	TemplateTrack schema wrapper
Text	Text schema wrapper
Tooltip	Tooltip schema wrapper
Track	Create a basic Gosling Track.
ValueExtent	ValueExtent schema wrapper
VcfData	VcfData schema wrapper
VectorData	VectorData schema wrapper
VisibilityCondition	VisibilityCondition schema wrapper
X	X schema wrapper
Y	Y schema wrapper
ZoomLevelVisibilityCondition	ZoomLevelVisibilityCondition schema wrapper
ZoomLimits	ZoomLimits schema wrapper