Outline

These notebooks contain an introduction to exploratory genomics visualization with Gosling, presented at ISMB 2022.

Our tutorial will start with several introductory slides about genomics data visualization and the Gosling grammar, followed by four hands-on practical sessions using the Gos Python library.

1. Single Track

Author custom tracks based on grammar of graphics.

• 01-Single-Track.ipynb

2. Track Alignment & Data Loading

Compose tracks either by stacking and overlaying (e.g., genes). Load remote, local, and in-memory datasets with Gos.

• 02-Track-Alignment-and-Data-Loading.ipynb

3. Semantic Zooming

Use a unique primitive in Gosling to reveal patterns across scales

• 03-Semantic-Zooming.ipynb

4. Coordinated Multiple Views

Compose multiple views with coordinated interactions.

• 04-Coordinated-Multiple-Views.ipynb